FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007942186

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942186
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448593
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22950.5115996014204413No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT19920.4440550788799647No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18270.40727340818960617No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18070.4028150238635021No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10840.24164443047484022No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA10680.238077723013957No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8930.19906686016054642No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7860.1752145040158897No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7710.17187071577131163No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7450.16607481614737635No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6620.14757252119404451No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA6340.1413307831374988No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6100.13598072194617394No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6010.1339744489994271No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5430.1210451344537253No Hit
CTGACTTCTATTACTCTGGGCGGTACCACCA5330.11881594229067328No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4820.10744706225910793No Hit
ACCGCCACCGTTAAAGCATATGGCGGCGAAG4790.10677830461019232No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG4540.10120532420256223No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC4530.10098240498625703No Hit

[OK]Adapter Content

Adapter graph