FastQCFastQC Report
Wed 8 May 2024
EGAF00007942187

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942187
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences389604
Total Bases17.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT48661.2489604829519205No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG33740.8660075358569214No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG24400.6262769376084434No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA23980.615496760813544No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT23820.6113900267964395No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT23570.6049732548947137No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT23270.5972731286126426No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21620.554922434061252No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18110.46483095656102097No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG17910.4596975390396402No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA16990.4360838184412891No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16950.4350571349370129No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16920.43428712230880584No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG16230.4165768318600425No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT15900.4081066929497644No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14690.3770495169454112No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13320.34188560692395353No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG12540.3218652785905689No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11840.30389831726573646No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC11710.300561595876839No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG11440.2936314822229751No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10990.2820812927998686No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAGGCA10770.27643453352634983No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA10120.2597509265818626No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10030.2574408886972413No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC9850.2528208129279987No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG9550.24512068664592768No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9470.2430673196373754No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9030.23177380109033785No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7900.20276999209453703No Hit
CATGCTGTCCTGCAGCGGCATCGGTGGTGGCGGGAAGCGGGTAG7620.19558320756460404No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7610.19532653668853503No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7400.1899364482910853No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT7230.18557304339791172No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7130.1830063346372214No Hit
GGAGATTTCGCTGTTGTCGGACAGGATTTCCTGAGCTTCTGCGG6730.17273949959446003No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6630.17017279083376968No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6290.1614459810474225No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6160.15810925965852507No Hit
CTGAGGCTGGGTCGCCGGAACCGGTGGAACCGGACCCATGCTGG6100.15656923440211085No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5980.15348918388928245No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5830.14963912074824695No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5740.14732908286362564No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCCACG5510.14142565271403784No Hit
GCTCGGCTCCTGCTGCATCTGGGTGATTTCGCGGCCAGCACGCA5500.1411689818379688No Hit
CGGAGAACCGCCCTGACCCATAACCTGAATCGGCTGCAGGACCG5330.13680557694479523No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT5260.135008880812312No Hit
AGATTCAACATCCGTTTCGCTACCGTTGAAGTGCATGTAGGTGG5180.13295551380375972No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4920.1262820710259648No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT4830.12397203314134353No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4770.1224320078849293No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG4750.12191866613279125No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4690.12037864087637704No Hit
CTGCCAACCCGCCGCTGCCTGACGTTCCAGGGCAGCCTGCAGTT4630.11883861561996284No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4510.11575856510713442No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4500.11550189423106538No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT4470.11473188160285828No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4360.11190850196609892No Hit
CAGCGCGCGCAGGCCCTCAGCGATGTTTTCGAACTTCGGGTTGG4320.11088181846182277No Hit
CAGTGCACGCAGGCCTTCAGCGATGTTTTCGAACTTTGGGTTGG4180.1072884261968563No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA3950.10138499604726851No Hit
ATCTTCACCACGGGAACCCGGAACGCCCACTTCGCCACGATCGC3900.10010164166692334No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)