FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942191

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942191
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422686
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT25840.611328503901241No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG17010.40242638743653686No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG16590.39248993342575816No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT15490.36646588720705203No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG14250.3371296896514197No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG13760.3255371599721779No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12970.3068471631423799No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12730.30116918942193494No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG12150.2874474195975263No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG11690.27656463663334013No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10060.23800173178198472No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9480.22427996195757607No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9270.21931173495218673No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT9250.21883857047548297No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9080.21481667242350114No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8880.21008502765646367No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8420.19920224469227749No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG8230.1947071821635919No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8090.19139503082666565No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG8000.1892657906814988No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7900.18689996829798006No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7770.1838243991994057No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC7680.18169515905423886No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7000.16560756684631145No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6740.15945642864916273No Hit
TTCGTAAGACGGCAGTGCGGACGGGGACTGACGATCGTCGGTGG6520.15425161940542154No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG6390.15117605030684717No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG5940.14052984958101286No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5360.1268080797566042No Hit
GTCCTCGTACAGAGAGCTCCAGCAAATGGTACCGTCTTCGATTG5290.1251520040881411No Hit
CGGGGTGTTACCACCGATCGTCAGAGTATCGGAGACTTTCGCAG5290.1251520040881411No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5250.12420567513473357No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5150.12183985275121484No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG5030.11900086589099236No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4960.11734479022252925No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4900.11592529679241802No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4710.11143023426373241No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4490.10622542501999119No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4320.10220352696800936No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)