FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007942193

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942193
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences365706
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12410.339343625754021No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT10710.29285819756853865No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9870.2698889271710062No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8040.21984873094781054No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7760.21219230748196638No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG7750.21191886378675767No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6940.1897699244748514No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6120.1673475414677364No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5810.15887078691626608No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG5730.15668323735459633No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG5170.14137039042290803No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4930.13480774173789875No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4310.11785423263495813No Hit
GCCCTCAACATCCAGCATTTCCATGTCGCCCAGGGTAAACTTAG4140.11320568981640991No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG4120.11265880242599245No Hit
ATAATCCCAAGATTCGTCCAGGTCCGCCGGGTCGATGGACGGTG3940.10773681591223551No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG3930.1074633722170268No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC3910.10691648482660934No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)