FastQCFastQC Report
Sun 21 May 2023
EGAF00007942194

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942194
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences365706
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG53441.4612831071953973No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19040.5206367956774021No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12040.32922620903129834No Hit
CCGGATTTTGAACAGAACATTGCGACCACCA11310.30926481928106186No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8380.229145816584907No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG8050.22012217464301925No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7850.21465330073884487No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA7180.19633257315986063No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6330.1730898590671195No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6130.1676209851629451No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6070.16598032299169277No Hit
GAACCGATCTACGCTACCATCGACGACCTGG6020.16461310451564917No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5150.14082350303249058No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA4670.12769820566247203No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4400.12031522589183662No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA4150.11347913351161863No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4000.10937747808348784No Hit
TTCAACAAAAAACAGAGCTCCGACGTAAAAG3990.1091040343882791No Hit
TCCTACACCAACGGCAAACTGACTATCACCC3900.10664304113140062No Hit
ATGACCGTACTGAACACCAAAGCTGGTGTTA3730.1019944983128524No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC3710.10144761092243497No Hit

[OK]Adapter Content

Adapter graph