FastQCFastQC Report
Sun 21 May 2023
EGAF00007942197

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942197
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences407612
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16370.40160741096925506No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14290.3505784913103638No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT12000.2943976134166806No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11440.2806590581239022No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11380.27918707005681875No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11270.2764884252671658No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG10970.26912848493174885No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10370.25440860426091483No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8480.2080409801477876No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8390.2058329980471625No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8370.20534233535813468No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8000.1962650756111204No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7860.19283043678792577No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7030.17246793519327203No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6750.1655986575468828No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6640.1629000127572299No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6460.15848404855597972No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6000.1471988067083403No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5750.14106552309549278No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5570.13664955889424255No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4910.12045769015632513No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4800.11775904536667223No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4640.11383374385444982No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4530.11113509906479692No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4450.10917244830868571No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4370.1072097975525745No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4260.1045111527629216No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4170.1023031706622965No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG4170.1023031706622965No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT4160.10205783931778259No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT4120.101076513939727No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT4090.1003405199061853No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)