FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007942198

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942198
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences407612
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA30180.7404099977429517No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15450.3790369272739762No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13940.34199189425237725No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13140.32236538669126524No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12700.3115708075326536No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG12270.3010215597185559No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC11910.29218963131605546No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11520.2826217088800133No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11170.27403511182202683No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10680.2620138759408457No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10150.24901131468160898No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9780.23993405493459466No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9000.22079821006251044No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8800.21589158317223242No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8680.21294760703806562No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8180.2006810398123706No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8110.1989637204007733No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8050.1974917323336899No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6360.1560307351108407No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6350.1557854037663268No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5550.13615889620521476No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5220.12806296183625604No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4930.12094835284535294No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4700.11530573192153322No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4630.11358841250993593No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC4550.11162576175382471No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4500.11039910503125522No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4450.10917244830868571No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG4160.10205783931778259No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT4140.10156717662875481No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)