FastQCFastQC Report
Wed 31 May 2023
EGAF00007942202

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942202
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences377928
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT81732.162581232404056No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG54611.4449842298003854No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23240.6149319447090451No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19860.5254969200482631No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC13920.3683241252302026No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12560.3323384348341483No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11850.3135517876420906No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9680.25613344340720984No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9580.2534874367604411No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8320.22014775301115558No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8110.2145911390529413No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6820.18045765330962513No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6500.17199043203996528No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC6500.17199043203996528No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6250.16537541542304354No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6170.1632586101056286No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5450.14420736224889397No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5300.14023835227874093No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5270.1394445502847103No Hit
GTTACCATGACCTTCAAGCTGGGCCCTCGTA5200.13759234563197223No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5010.1325649330031117No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4930.13044812768569675No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4490.11880569843991447No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4430.11721809445185327No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG4390.11615969179314578No Hit
GGTCGCTGGAACCCGCAGCCGGGCGTGTACC4110.10875087318219342No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4030.10663406786477847No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)