FastQCFastQC Report
Wed 31 May 2023
EGAF00007942203

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942203
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences367507
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT23520.6399878097560047No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17160.46692988160769733No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT15140.4119649421643669No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14250.3877477163700283No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14100.3836661614608701No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12620.3433948196905093No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10640.28951829488962116No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8250.22448552000370062No Hit
GACAGACGGTGGACGCGGGATGAAACGGCGGGATTTACGACGGT8240.22421341634309006No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7670.20870350768828894No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5160.14040548887504184No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5040.1371402449477153No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4960.13496341566283093No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG4810.1308818607536727No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4540.12353506191718797No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG4490.12217454361413524No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4310.11727667772314541No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4200.11428353745642941No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC3990.10856936058360792No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA3820.10394359835322864No Hit

[OK]Adapter Content

Adapter graph