FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942208

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942208
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438880
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT27700.6311520233321181No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18290.41674261757200143No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15560.3545388261028072No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC15430.35157674079475026No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14620.3331206707983959No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14060.32036091870215094No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13870.3160317170980678No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG12460.2839044841414509No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10690.24357455340867662No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10580.24106817353262852No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10470.23856179365658037No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9440.21509296390812976No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6410.1460535909588042No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5120.11666059059423989No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4560.10390083849799489No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)