FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences385941
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA29890.7744707092534869No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA26170.6780829194099616No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG15390.3987656144332942No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA12510.32414280939314555No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12300.3187015631923014No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12170.31533317268701694No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC11160.2891633695305759No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9790.25366571574411634No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8040.20832199740374824No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8020.2078037834798583No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7160.18552058475259173No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT6890.17852469678007776No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6820.17671094804646306No Hit
ACGACGAGAACGGCGAGAGCCTGCGGACTCACCCTGACCGGACT6250.1619418512156003No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5630.14587721957501276No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG5510.14276793603167326No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5240.1357720480591593No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5080.13162633666803994No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT4900.12696241135303066No Hit
GGTATCGGAAGAGTCGTCATCCTCTTCTTCGGAGTCTTCTACCG4660.1207438442663516No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4500.11659813287523221No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4450.11530259806550743No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT4430.1147843841416175No Hit
GCCGGACTCGGCGTTCAGACGTTCGTCATCTTCTTTGCGACGCG4220.10934313794077333No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4210.10908403097882836No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG4090.10597474743548885No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4080.10571564047354388No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4030.1044201056638191No Hit
ATACAGGCCGGTCTGCGGGCAAACGCTCACACCTTTGACACCGG3980.10312457085409428No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG3920.10156992908242453No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA3890.10079260819658964No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)