FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007942212

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942212
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403350
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13110.32502789140944593No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11540.28610388000495846No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7520.18643857691830917No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7490.18569480599975208No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6230.15445642742035454No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6060.15024172554853105No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG5980.14825833643237885No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTA5370.1331349944217181No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5310.13164745258460395No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4830.1197471178876906No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4570.11330110326019587No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4550.1128052559811578No Hit
ACCACTCCGACGAAAAGCCACTTCGCAAACC4340.10759885955125821No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4170.10338415767943473No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)