FastQCFastQC Report
Sun 21 May 2023
EGAF00007942216

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942216
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400152
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25650.6410064175613267No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG18490.4620744117235451No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17670.44158219876446947No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16700.41734141026409965No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16200.4048461584597852No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13990.3496171454847158No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12020.30038585337571727No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10450.2611507627101701No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10400.2599012375297387No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9810.24515684040064775No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9410.23516063895719627No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8720.21791719146724242No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8680.2169175713228973No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8540.21341890081768927No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8130.2031727943381515No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7680.19192706771426857No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7390.18467982166776625No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7050.1761830504408325No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6950.17368400007996962No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6910.17268437993562447No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6860.17143485475519304No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6810.1701853295747616No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6680.16693656410563987No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6450.16118874827565527No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5230.1307003338731282No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5050.12620204322357503No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4910.12270337271836702No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4880.12195365761010815No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA4770.11920470221315901No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4440.11095783602231152No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4140.1034606849397229No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4130.10321077990363661No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG4020.10046182450668746No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)