FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942219

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942219
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432688
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18320.4233997707354953No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13320.3078430647487335No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12900.2981363014458455No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12370.2858872906112488No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10010.23134452538549716No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9510.21978885478682098No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG9350.2160910401952446No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA9270.2142421328994564No Hit
AAACGCGTCACCGTCGCCGTGGCCACGAATGATAGCAGAAACGT9120.21077543171985355No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG8570.1980641940613098No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7300.16871279074067225No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7150.1652460895610694No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7030.16247272861738712No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6800.1571571201419961No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6360.14698813001516103No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6100.14097918130384943No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6030.13936138742003476No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5960.1377435935362201No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5350.12364567540583515No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC5340.12341456199386164No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5180.11971674740228525No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5130.11856118034241764No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5060.11694338645860296No Hit
AGTGATATCGTCCTGCGTACGGCGAACGTCCTGCTTGTACAGTT5060.11694338645860296No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4980.11509447916281476No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG4580.10584994268387382No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4560.10538771585992678No Hit
GGAGGATTCGTGGCCTTCTGCGATTTCGAAGGCTTCGTGAAAAG4450.10284546832821802No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4410.10192101468032393No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4380.10122767444440336No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4330.10007210738453573No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4330.10007210738453573No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)