FastQCFastQC Report
Sun 21 May 2023
EGAF00007942220

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942220
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432688
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG56691.3101819324779056No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24130.5576766630921126No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14870.34366564360462964No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13330.30807417816070704No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13010.30067854897755425No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11390.2632381762378434No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9820.22695337055800022No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC9710.22441112302629146No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG9140.2112376585438006No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8330.19251747217394521No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8130.18789520393447473No Hit
ATGTCCAACATGGACATCGATGGTATTAACA8090.1869707502865806No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7480.1728728321561957No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7460.17241060533224864No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7270.1680194505047517No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7000.16177938838146655No Hit
TGGGATGGTTACCGTCGTGAATCTCTGGATA6760.156232666494102No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6720.1553082128462079No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6620.15299707872647267No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6600.1525348519025256No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6100.14097918130384943No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5890.13612579965240543No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5650.13057907776504085No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT5370.1241079022297822No Hit
CCGAAAGACCAGGAACGTAAACGTCGTTTCA5230.12087231446215287No Hit
ACCAACACCACCGCATTCGTCGCTGTAACCT5140.11879229375439115No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5070.1171744998705765No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5040.11648115963465591No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5020.11601893281070887No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4860.1123211182191325No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4530.10469437562400621No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4450.10284546832821802No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4410.10192101468032393No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)