FastQCFastQC Report
Wed 31 May 2023
EGAF00007942221

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942221
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences372065
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17950.4824425839571042No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG11780.3166113447919046No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11310.3039791434292395No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10430.28032736215446225No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10160.2730705656269738No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9600.25801943208847916No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8710.23409888057194309No Hit
GATACCCGGGCACATGTAGCCATCCAGGTCACAGGTTTCAGTGG8400.22576700307741926No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7530.20238399204440083No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6430.1728192654509293No Hit
GATCAGAACACGATCGGCGTCACGAGCCAGTGCTTCCTCAGACG6240.16771263085751145No Hit
GTCTTCCGCCGGAACGGTGGACTGACGGGTACCACCGAAACGCG5410.14540470079152837No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5340.14352330909921654No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4910.13196618870358676No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA4780.1284721755607219No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4760.12793463507720426No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG4760.12793463507720426No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4470.12014029806619811No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4260.11449612298926264No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4190.1126147312969508No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG3890.10455162404418583No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG3750.10078884065956217No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)