FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942223

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942223
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427554
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16050.37539117865813443No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14690.3435823311207473No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8060.18851419937598526No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7420.17354532994662664No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG7390.17284366419212543No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7080.16559311806227983No Hit
CAGGTACGGCGGATAGGTGTGGGCTTCCGCTTCGCCACGGTCTG5220.12208984128320632No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5150.12045262118937022No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4300.1005720914785033No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)