FastQCFastQC Report
Wed 31 May 2023
EGAF00007942224

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942224
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427554
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64071.4985241630296993No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35660.8340466935170762No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12940.3026518287748448No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8290.19389363682716101No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG7300.17073866692862188No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7120.16652867240161476No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5340.12489650430121108No Hit
CGTCCTTCCGATATCGACACCGCGGCACGCG5320.12442872713154363No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4520.10571764034484532No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4350.10174153440267195No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)