FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942226

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942226
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431521
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG29740.6891900973533154No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29150.6755175298537035No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21570.4998597982485209No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT19440.4504995121906002No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18630.43172869918265855No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14670.33996028003272144No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14250.3302272658804554No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13940.32304337448235426No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12650.2931491167289657No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12320.285501748466471No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC12010.2783178570683698No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11590.26858484291610374No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11550.2676578891873165No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11320.26232790524678984No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11280.2614009515180026No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10400.24100796948468323No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10000.2317384321968108No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8970.20786937368053932No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8860.20532025092637438No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8330.1930381140199434No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8140.188635083808204No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA8050.1865494379184327No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7480.17334034728321449No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7290.16893731707147508No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6920.16036299508019308No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6610.15317910368209195No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6300.14599521228399082No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5980.13857958245369287No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5970.13834784402149608No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5960.13811610558929924No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5760.13348133694536302No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5740.1330178600809694No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5710.13232264478437897No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5710.13232264478437897No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5680.13162742948778855No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5440.12606570711506507No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5220.12096746160673524No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5140.11911355414916076No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4630.10729489410712342No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT4570.10590446351394255No Hit
CGCGATAACAACATTGAACGTGACAACAATA4560.10567272508174572No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4550.10544098664954892No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)