FastQCFastQC Report
Sun 21 May 2023
EGAF00007942227

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942227
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424880
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA22470.5288552061758613No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG21300.5013180192054227No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20030.4714272265110149No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16430.38669742044812655No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA13120.3087930709847486No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12730.2996140086612691No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12290.2892581434758049No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12250.2883167011862173No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12170.286433816607042No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG11940.28102052344191303No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG11510.2709000188288458No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10690.251600451892299No Hit
TACACCGGTGCGGGCTTTGGTACGCGCGTTACGACGTTTCAGGG10120.238184899265675No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9330.21959141404631893No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8610.2026454528337413No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8490.19982112596497836No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT7030.1654584823950292No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG7000.16475240067783845No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6900.16239879495386933No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT6850.16122199209188476No Hit
GACGGTCTGGATAGCCGCGTCTACGGTGGACACCGGCGGCGGGG6840.16098663151948786No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6750.15886838636791564No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6460.1520429297684052No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6390.15039540576162683No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG6370.149924684616833No Hit
ACGGCGGGCAACACGACGACGACGACGTTTCATTTTTGCGTAGC6020.14168706458294109No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5810.1367444925626059No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5780.13603841084541518No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG5680.13368480512144604No Hit
AACAGTCTGAATTGCCGCATCCACAGTGGAAACCGGCGGTGGGG5580.13133119939747695No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5500.12944831481830163No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4900.11532668047448691No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4860.11438523818489926No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4720.11109019017134249No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4700.11061946902654868No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)