FastQCFastQC Report
Sun 21 May 2023
EGAF00007942230

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942230
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488802
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA44840.9173448553811154No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33220.6796207871489888No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21220.43412260997295427No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20580.4210293738568991No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16690.3414470480890013No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16180.3310133755590198No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15940.32610341201549914No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG14770.30216733974083576No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC13620.2786404310947991No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG13080.2675930131218776No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12670.25920515873502975No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12010.24570275899034782No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG11060.2262674866305784No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG9910.20274057798454181No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8320.17021206950871723No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7350.15036763352032112No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC7050.14423017909092026No Hit
AGCGAACAGGCAGCGGAAGCGATGGAAGTTG7050.14423017909092026No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6990.14300268820504008No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6960.14238894276209998No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6610.1352285792611323No Hit
TCTCAGAACTCCCGTGCCTCCATTGGCTCTA6490.13277359748937198No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG6420.13134152478917843No Hit
GCAGAAGCGATGGAAGTGGCGAACAAAACCC6330.1295002884603582No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6260.12806821576016467No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6160.12602239761703105No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5930.12131701588782369No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5920.12111243407351034No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5740.11742996141586982No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5680.11620247052998964No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5540.11333832512960258No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5540.11333832512960258No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5300.10842836158608188No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5030.1029046525996211No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG4910.10044967082786077No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4900.1002450890135474No Hit
GGCCGTACCGGTGTTGATGTGGGCAAATCTT4890.10004050719923405No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)