FastQCFastQC Report
Wed 31 May 2023
EGAF00007942234

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942234
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547213
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT57641.0533375486327994No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44360.8106532556792327No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24610.449733467589403No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT21640.39545844122855267No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT21330.3897933711370161No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA19710.360188811303825No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC19400.35452374121228847No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18010.32912229789862446No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14550.2658928059092164No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13790.2520042469751267No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA13280.24268429295356653No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC12090.22093773356992616No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11540.2108868027623613No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC10420.19041945275422917No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGC10390.18987122016472563No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG9670.1767136380166407No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9620.17579991703413478No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8130.14857103175545902No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7490.13687540317938354No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT7160.1308448446948446No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC6480.1184182393327644No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC6360.11622530897475024No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6090.11129121566921839No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5930.10836730852519952No Hit
GCTGCTTCTAGCGATGCACTGGAAGCCCTGG5850.10690535495319008No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5510.10069205227214997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)