FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942235

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942235
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences554354
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20630.3721448749355105No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11430.20618593894875836No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10990.19824877244504413No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9280.16740205716924564No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8780.15838254977866129No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7320.13204558819815498No Hit
CTGGTCCATGGTCTCTTTCGGCATTGCGCCGTAAGTGGTCAGGT6330.11418696356479793No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6050.1091360394260707No Hit
GGAGCTCGGACCTACGTTGGTAACAGTGAACACGTCCGGACGCG6000.10823408868701227No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5750.10372433499172008No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5680.1024616039570383No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)