FastQCFastQC Report
Wed 31 May 2023
EGAF00007942239

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942239
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519794
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA49100.94460497812595No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA43850.8436034275116682No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG38710.7447180998626379No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG32860.6321735148924381No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG27580.5305948125603605No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22630.4353647791240376No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG21890.4211283700850722No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT20590.3961184623139167No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA15870.305313258714029No Hit
TGGCTGGGTCGGAACGTGTTTTTTCGGGACGCTGCTGAAGGCAG15570.29954174153607005No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG12560.2416341858505485No Hit
ATTACCGTTGTCGAAGGTCACGTTAGTACCGGAAGTTACCGTCT11890.22874446415310679No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG11770.22643585728192323No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC11500.22124149182176014No Hit
TTTAACAGTAATACCGTTGCCATTGGTGTCTTTGGTAACGCTGG11490.2210491079158282No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG10070.1937305932734891No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC9820.18892099562518996No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT9610.18488093360061872No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT9390.18064848767011546No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9290.17872464861079582No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT9170.17641604173961223No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG9080.17468458658622454No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG8590.16525777519555823No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG8570.16487300738369431No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA8390.16141009707691892No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT8270.15910149020573536No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG7980.15352235693370836No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT7700.14813560756761332No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA7330.1410174030481306No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG7190.1383240283650831No Hit
TTTACGGGTCGGCGGCGGCGGCTGCTGTTGACGCTGCTGCAGGT7130.13716972492949128No Hit
GAACGGACGAGTCGTCTTGCGCGGTTTTTTACGCGGAGACAGTT7040.13543826977610363No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6600.12697337791509714No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG6480.12466477104391355No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6460.12428000323204962No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6320.12158662854900211No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6190.11908563777188656No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5900.11350650449985955No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5770.11100551372274402No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT5690.10946644247528828No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT5660.1088892907574924No Hit
CGGCGAAGCGACCGTTGAAAAAGGTGGATGCAACTGATTTAAAT5620.10811975513376454No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5560.10696545169817273No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5490.10561876435664896No Hit
CGTACTCCTGGCGACAGAGAAAATGGCGGTGACGTTATTTAAAT5210.10023201499055395No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)