FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942242

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942242
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510779
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42090.8240354439003953No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19990.3913629965210003No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12150.23787195636469No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11660.22827876635492061No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6190.1211874411438215No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5710.11179003052200658No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5320.10415463439178198No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)