FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942243

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942243
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505698
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21820.4314828217631867No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21420.42357296251913196No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20500.4053802862578061No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG20480.40498479329560333No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG17450.34506760952188853No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16530.3268749332605626No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG14750.291676059624519No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14060.2780315524285245No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12290.24303042527358226No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10910.21574141088159335No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG10440.20644732626982903No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10150.20071267831788933No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10070.19913070646907838No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9850.19478028388484828No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9130.18054253724554972No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT8760.17322591744479907No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7030.13901577621426225No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6820.13486310011113353No Hit
CGGAGCCTGCGGTGGCGGCGGCTCTTGATAACCCTGATACGGCG5500.10876056460575284No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5490.10856281812465148No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT5400.10678309979473914No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5180.10243267721050904No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)