FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942244

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942244
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505698
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40620.8032462062337601No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28200.5576450767058599No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC21280.42080451178371275No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20800.41131268069084714No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20470.40478704681450195No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC18120.3583166237556803No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17420.34447437007858445No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15370.30393634145280385No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC15010.29681746813315457No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13710.27111042558997667No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC11950.23630704491613572No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10900.215543664400492No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10710.21178648125956598No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10430.20624957978872768No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10420.2060518333076263No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10060.19893295998797703No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA9020.17836732595343466No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7110.1405977480630732No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7000.13842253677095814No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6670.13189690289461298No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT5770.11409971959548981No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5750.11370422663328707No Hit
AGCCCGACCCAACCGATCTCTCACGAAGAAC5200.10282817017271179No Hit

[OK]Adapter Content

Adapter graph