FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942245

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942245
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520362
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19730.3791591238407109No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14240.2736556474146844No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14180.27250260395647646No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13390.2573208650900719No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8830.16968956226626847No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8290.159312171142397No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7630.1466286931021097No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7470.1435539105468885No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6560.1260660847640681No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6420.12337565002824957No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6280.12068521529243104No Hit
ACGCAGGCCGGATTCGTTATAGACGAAACGCGCGTCAACGTTGT6280.12068521529243104No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5700.10953912852975428No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5320.102236519961104No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5270.1012756504125974No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)