FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942246

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942246
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520362
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42650.8196217248761439No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24830.47716781778838574No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16940.3255426030340417No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14250.2738478213243857No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14210.2730791256855804No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13970.26846695185274866No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9390.1804513012095426No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7660.14720521483121365No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7240.13913391062375807No Hit
TTCAGCTACGGTAATGCTAACTGGAAAGACC6830.13125478032600382No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6660.12798782386108132No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6580.12645043258347075No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6480.12452869348645751No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6270.12049304138272972No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6250.12010869356332705No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6250.12010869356332705No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6160.11837912837601516No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5970.11472782409169002No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5840.1122295632655728No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5600.10761738943274105No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5320.102236519961104No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5260.10108347650289606No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5230.1005069547737921No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5210.10012260695438946No Hit

[OK]Adapter Content

Adapter graph