FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533283
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11300.2118949975903976No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10760.20176904195333434No Hit
ACCCTCACCGGAACGAGCCGGACGAGAACCTTCACGGTGACGGC10720.20101897116540374No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10100.18939287395247925No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8240.15451458231370585No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7350.13782550728224977No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6920.12976224631199568No Hit
ACGACGATCACCGAAGTTGCGGTGTTCACCGCGTTTAAAGTCAC6360.11926125528096714No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6280.11776111370510592No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5740.10763515806804266No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)