FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942248

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942248
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533283
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44380.8322035392090128No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23370.43822885784845944No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16480.3090291646274117No Hit
CGTCACGCACATCGCCAGGGTGTAGGCGGCA11130.2087071967416925No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10760.20176904195333434No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9900.18564252001282622No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7850.1472013921313824No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7260.13613784800940587No Hit
ATCCGTCCGCGCCGTAACACCGAGAAAGTCG6720.12601189237234264No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5900.11063544121976511No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5870.11007288812881716No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5460.1023846625525284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)