FastQCFastQC Report
Wed 31 May 2023
EGAF00007942249

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942249
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences593611
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC32100.5407581732818294No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT31360.528292097013027No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT26010.43816573479938886No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC21810.3674123289494298No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT17260.2907628059453076No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG15790.26599911389782194No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG14930.2515115117475923No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC14670.24713153900449958No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG14480.24393078969223952No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT14480.24393078969223952No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12920.21765095323368336No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12620.21259713853011486No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG11010.1854749996209639No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT10670.1797473429569196No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10580.17823119854584907No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10330.17401968629287531No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA9870.1662705037474036No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9630.1622274519845488No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9080.15296212502800657No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG8700.14656062640348647No Hit
CGGCGAAGCGACCGTTGAAAAAGGTGGATGCAACTGATTTAAAT8440.14218065366039376No Hit
CGTACTCCTGGCGACAGAGAAAATGGCGGTGACGTTATTTAAAT8170.13763222042718212No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG7670.12920919592123462No Hit
CCCATGACGGATTCCTGTCACCGAAGGATGCGTACTCCTGGCGA7620.12836689347063987No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7570.12752459102004512No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7210.12146001337576293No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA7140.12028078994493027No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7060.11893310602397868No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6980.11758542210302707No Hit
TGCATCTTCGAAGTCTTCATCATCGTCGTCGTCTTCTTCTTCAC6770.1140477518105291No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA6570.11067854200815011No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT6520.10983623955755538No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT6400.10781471367612797No Hit
CACCTGTTCCATCTGACCGGTAGTCAGCGCCTGTTTAGAGTTGT6250.10528780632434372No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)