FastQCFastQC Report
Sun 21 May 2023
EGAF00007942250

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942250
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences593611
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA68851.1598504744689704No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46580.784688962974069No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA31350.5281236365229082No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA28280.4764062660563904No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26840.4521479554792617No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25780.434291143526653No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA20030.33742636170825674No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA18790.3165372609335069No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC16780.282676702419598No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT16500.27795980869626746No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA15280.25740762890175556No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG14620.24628923655390483No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13860.23348623930486462No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12910.2174824927435644No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12690.2137763619609475No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA11480.19339264265655454No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG11000.18530653913084494No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG9880.16643896423752255No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9520.16037438659324035No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9380.15801593973157507No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT8850.14908753375527073No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT8720.14689754738372435No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8240.13881144385801478No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG7540.12701920954968826No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7420.12499768366826088No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7160.12061771092516815No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6750.11371083083029122No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6720.11320544935993436No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT6640.11185776543898276No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG6600.11118392347850697No Hit
GTACAGCCAGTTACCCCGAGCAAGCCAGCAC6590.11101546298838802No Hit
TACTATAACGGTAAAGTTCCGTATGATGCAC6550.11034162102791222No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6150.10360320142315423No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)