FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942252

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942252
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422440
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34510.8169207461414638No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23120.547296657513493No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21490.5087112962787614No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12670.299924249597576No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9620.22772464728718872No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7660.18132752580248082No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7650.18109080579490577No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7040.16665088533282835No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5360.12688192406022156No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5000.11836000378752012No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4410.10439352334059276No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)