FastQCFastQC Report
Sun 21 May 2023
EGAF00007942254

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942254
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509358
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43500.8540162321981789No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG22270.43721704577134357No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21320.41856611656241777No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG13360.2622909623486821No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13340.26189831120744156No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13300.2611130089249604No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11540.2265597084957927No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10790.2118352906992724No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10370.20358961673322104No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7480.1468515268239627No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7370.14469194554713974No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6950.13644627158108835No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6530.12820059761503697No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5570.10935334283549095No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5360.10523050585246527No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC5300.10405255242874364No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5270.10346357571688282No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5180.10169664558130039No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)