FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942258

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942258
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505899
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28390.5611792077074673No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG18020.3561975809400691No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC13790.2725840533387099No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA13470.2662586800922714No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12400.24510821329949256No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT12180.24075951919256608No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11420.2257367577322746No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9770.193121551930326No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8430.1666340514608647No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7790.15398330496798768No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7460.14746026380759797No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6970.13777453602398898No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6480.12808880824038No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5830.11524039383355175No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5560.10990336015686926No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5440.10753134518945481No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5340.10555466604994278No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5100.10081063611511389No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5090.10061296820116268No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)