FastQCFastQC Report
Wed 31 May 2023
EGAF00007942259

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942259
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526030
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT31290.5948329943159135No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC25120.47753930384198623No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA24840.4722164135125373No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT24810.4716461038343821No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC20810.39560481341368364No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT19770.37583407790430207No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19260.36613881337566295No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17900.3402847746326255No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16100.3060661939433112No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14080.26766534228085853No Hit
ACGACGGGAGGAGCGAGAGTTCACAGACGGACGACGACCTGGGC13440.25549873581354676No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12930.2458034712849077No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11450.2176681938292493No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT11250.21386612930821436No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10140.19276467121647053No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9040.17185331635077847No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8990.17090280022051973No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8710.16557990989107085No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG8520.16196794859608768No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8050.1530330969716556No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7810.1484706195464137No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7360.13991597437408512No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7200.1368743227572572No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7080.13459308404463624No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6760.12850978081098036No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6610.12565823242020419No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6300.11976503241260003No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6190.11767389692603084No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5960.11330152272684069No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5920.1125411098226337No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5800.11025987111001273No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5790.11006976788396099No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5780.10987966465790926No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT5730.10892914852765052No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5580.10607760013687433No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5520.10493698078056385No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5310.10094481303347719No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)