FastQCFastQC Report
Wed 31 May 2023
EGAF00007942260

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942260
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526030
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT47860.9098340398836567No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA43670.8301807881679751No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43200.8212459365435432No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC31960.6075699104613805No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG31430.597494439480638No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24810.4716461038343821No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19530.3712716004790601No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18750.35644354884702395No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17980.34180560044103947No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17730.33705301978974583No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13660.25968100678668515No Hit
GCCTTCGAAGCGGTTCTGCCGATGCTGGAAG13320.25321749710092584No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG11660.22166036157633592No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11300.21481664543847306No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10780.2049312776837823No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10430.1982776647719712No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10180.19352508412067754No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9480.1802178582970553No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8810.16748094215158832No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8160.15512423245822482No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7790.14809041309431023No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7670.14580917438168925No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7370.14010607760013688No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7250.13782483888751593No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7180.1364941163051537No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7140.13573370340094673No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7070.13440298081858448No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6700.1273691614546699No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6620.12584833564625592No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6580.1250879227420489No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6300.11976503241260003No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6040.11482234853525464No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5900.1121609033705302No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT5860.11140049046632322No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5600.1064578065889778No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)