FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942262

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942262
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486925
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40900.8399650870257227No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31010.6368537249062998No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10330.21214766134414953No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7060.14499152846947683No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6740.13841967448785747No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6600.135544488370899No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6530.1341068953124198No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6380.13102633875853573No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5780.11870411254299942No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5150.10576577501668635No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5120.10514966370590954No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4990.10247984802587667No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4870.10001540278276942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)