FastQCFastQC Report
Wed 31 May 2023
EGAF00007942264

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942264
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521900
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43260.8288944242191991No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20140.3858976815481893No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13570.2600114964552596No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9530.18260203104042919No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8410.1611419812224564No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5930.1136232994826595No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5750.11017436290477103No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5390.10327648974899407No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5330.10212684422303124No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)