FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942265

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942265
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526599
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8820.1674898736989626No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7090.1346375515335198No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6890.13083959521381544No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5450.10349430971194401No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5380.10216502500004748No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5320.10102563810413616No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)