FastQCFastQC Report
Wed 31 May 2023
EGAF00007942269

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942269
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences575449
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT25690.4464340019706351No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15920.27665353489188443No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG15820.27491576143150825No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG15730.2733517653171697No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA14200.24676383137341448No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC13780.23946518283983462No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT13110.22782210065531439No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT12940.2248678857726749No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12800.2224350029281483No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT10500.18246621333949664No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10480.1821186586474214No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT9710.168737803002525No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9300.16161293181498274No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9080.1577898302021552No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG8770.1524027324749891No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8760.15222895512895146No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8720.15153384574480103No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC8470.14718941209386063No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG8420.14632052536367254No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8400.1459729706715973No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8290.14406141986518353No Hit
AGATTTCATAGCGAATGGCAGGGTCGCAATGTCTGCAATGGTCG7660.13311344706481373No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7630.1325921150267009No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT7600.13207078298858804No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA7340.12755257199161002No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7160.12442457976293295No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG6970.12112281018821823No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6410.11139127881011175No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT5860.10183352477804287No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)