FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942270

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942270
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences575449
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25330.44017801751328095No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20790.36128310241220335No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG17390.3021988047594139No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC17260.29993969926092495No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17190.2987232578386616No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16690.2900343905367809No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG16360.28429973811753956No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14970.2601446870183109No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA14800.2571904721356715No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA14390.2500656009481292No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG14050.24415717118285024No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT11720.20366704955608575No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT11050.19202396737156552No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG10660.18524665087609848No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9720.1689115803485626No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9430.16387203731347172No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC9400.1633507052753589No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8870.15414050593536524No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA8490.14753696678593586No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8420.14632052536367254No Hit
TCCTACACCAACGGCAAACTGACTATCACCC8360.14527786128744685No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC8250.14336631048103307No Hit
CCGGAAAAACTGCCGAAAACTATCGAGAAAC8030.13954320886820554No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7830.1360676619474532No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7580.1317232282965128No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA7450.1294641227980238No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6810.11834237265161639No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC5890.10235485681615573No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)