FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942271

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942271
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences580191
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA35330.6089374016487674No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA30750.52999788000848No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21330.3676375538400285No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20830.35901970213257356No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16930.2918004588144249No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA16060.27680539684345323No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG15820.2726688280238749No Hit
CAGGCCGGTGCGCAGGTTGGTGAATTTAGCAATCGGCAGGCCAC14450.2490559143454483No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA13960.24061041967214244No Hit
TTCGTCACCGGTGCTCGGCAGCTTACGCTTGTTGTTAGTGGATT13790.23768035009160776No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12750.21975521854010147No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12280.2116544379350938No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12010.20700079801306812No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11440.19717644706656948No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC11330.19528051969092938No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11310.19493580562263116No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG10430.17976838661751043No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC9200.15856847141717123No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC9090.15667254404153116No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG9020.15546604480248746No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8960.15443190259759287No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7660.13202548815820997No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7240.12478649272394782No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7240.12478649272394782No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT7170.12357999348490412No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7010.12082228093851853No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6980.12030520983607122No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6610.11392799957255456No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6490.11185971516276536No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6180.10651664710414328No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6140.1058272189675469No Hit
CGCATCAATAACAGCTACAACGGTACCAGCGCCTTTACCTGCCT5990.1032418634553104No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)