FastQCFastQC Report
Wed 31 May 2023
EGAF00007942272

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942272
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences580191
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT68831.1863334660482496No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29690.5117280343886754No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21530.3710846945230105No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17990.31007030443422945No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17720.30541666451220373No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG16460.28369967820941727No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC15790.2721517569214276No Hit
TCCCAGGAAATCACCTTCGTTTACGAGAAAA14250.2456087736624663No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC14030.24181691891118615No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13710.23630149381841498No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13620.23475028051107308No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13200.22751128507681093No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12980.2237194303255307No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12180.2099308675936028No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11630.20045123071540236No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10520.18131959992485233No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG9670.16666925202217892No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9490.16356682540749512No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA9460.1630497543050478No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8670.14943354860726898No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG8040.13857505545587576No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7930.13667912808023563No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7880.13581734290949016No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7870.13564498587534105No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7830.13495555773874465No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7620.13133606002161358No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7560.130301917816719No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6820.11754749728968564No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6740.11616864101649284No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6550.11289385736765996No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6410.11048085888957257No Hit
GCTGGTCACCTGATCGGTAAAGGCGCGAAAG6010.1035865775236086No Hit
GTTGAAACCCCGCAGCCGACCGCTGTATCCG5890.10151829311381942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)