FastQCFastQC Report
Sun 21 May 2023
EGAF00007942276

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942276
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences550558
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42710.7757584123743547No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29380.5336404157236839No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG27490.4993116074963945No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG20570.37362094456896455No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG19290.3503718046055093No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17810.3234899865227642No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17730.32203691527504824No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16610.30169391780702487No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13360.24266289836856425No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11030.20034219827883712No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10540.1914421368865769No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10540.1914421368865769No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8740.15874803381296793No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8450.1534806505399976No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7890.1433091518059859No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC7520.13658869728529965No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7360.13368255478986774No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7170.13023151057654234No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7090.12877843932882638No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7080.1285968054228619No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6910.1255090290214655No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6520.11842530668885022No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)