FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942277

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942277
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences609123
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCAGCAGATAGCGTTCTGCTTCGATTGCGGCGCTGCAACCCA178302.9271592108654576No Hit
GAAGCCGTAGTTGTAAAAGTCCCAAGAACCATATTTGGCGTGCA65021.0674362977592375No Hit
GATACCCGGGGTTACTTTGTCCAGAGCTTTGATCATTTCGTCGA51640.8477762291031532No Hit
TACGGTGCAGGTATAGTAAGAGTGGAAGAAGAGAAGCTCGGGCT51350.8430152859110557No Hit
ACCGGATACGTCGATAACCCACCATTTGTCACGGTGTTTGAAGT46530.7638851266492974No Hit
GAAGGCGGCGATGTCAGCAGTGGTAATCGCCTTGCCCGGCAGGG40010.6568459900545539No Hit
TTCTTTACCCATCTGGTCGCTGTCCGGGGTACGCACGTACAGCG38140.62614611498827No Hit
GGACGGAGCTGGAGACGCGGCACGCAGGCTCGCATAACCACGGT30940.5079433874603323No Hit
TTCATCCGCGACAGCAGAGGCGGCAACGGAGTCTGCGGCAGAAT28750.4719900578372513No Hit
TTCTTTGGTGAAGCGGGTGACATAATCTGGGTCCACGTCGTACA19090.3134013984039348No Hit
GCGTGCGGACACAATACCCAGCTGAGCGCCGTCCGGACCAATCA15950.26185187556536205No Hit
ACGGAAGTCCCAGCCTTTCCACGCGGCGTCCAGGGTCAGGCCGA14340.23542043232647594No Hit
GTCGGTCGGGCGGGCGTCAGCGTTTTTGACCCAGAAGAATTTCC13820.22688356867168044No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12320.20225800043669342No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12090.1984820799739954No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11320.18584095494670205No Hit
CAGGGTGCCAAAGTCGGTCGGAGCGAAGCCCAGATCACCGATTT9170.15054430714322067No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8530.1400373980296262No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG8500.13954488666492645No Hit
ATACAGGGCGCGCGCACGGTCTTCATCGGACAGTTTCAGTTTCA8260.13560479574732853No Hit
CTGTTCGATATCGGTCAGAAAGACGCTTTGGACATCTGGGTGGC8240.1352764548375287No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT7940.13035134119053132No Hit
TTTGACGGAAATGCGACGTTTCTTGCTAACGAATACGATGCCTG7700.12641125027293337No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7380.12115779571613616No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6670.10950169341824229No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6430.10556160250064436No Hit
ACGACCGTACGGGCCTTCACGGCTCAGCTCTGCTTCCTGGGAAC6390.1049049206810447No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC6300.1034273865869455No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)