FastQCFastQC Report
Sun 21 May 2023
EGAF00007942279

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942279
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences593131
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT29670.5002267627218945No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC28480.480163741230858No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA22700.38271477970296613No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT22380.37731968148688905No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA17970.3029684841965771No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17800.30010233826928623No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT16430.2770045740317063No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT15670.26419121576852334No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC12550.211589008161772No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA12140.2046765385724233No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC10730.18090438705783377No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10710.18056719341932895No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA10620.17904982204605727No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG10190.17180015881820374No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9590.16168434966305925No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC9560.16117855920530202No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG9440.15915539737427314No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9270.1562892514469822No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8650.1458362486533329No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8560.14431887728006124No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT8540.14398168364155642No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8470.14280150590678956No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7860.1325170999323927No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC7170.12088391940397654No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6900.11633180528416152No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6070.10233826928621165No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)