FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942280

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942280
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences593131
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC41590.7011941712707648No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG30230.5096681846000294No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA24310.4098588676026038No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA22870.3855809256302571No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG20320.342588736720893No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19870.33500187985453467No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17710.29858496689601455No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG17670.2979105796190049No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC17380.2930212718606851No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC15360.25896471437169866No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG13530.22811149644850803No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG11770.1984384562600842No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10700.18039859660007654No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC10240.17264314291446578No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10190.17180015881820374No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC10140.1709571747219417No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9980.16825962561390317No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG9810.16539347968661222No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9450.15932399419352555No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9260.1561206546277298No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9230.15561486416997258No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9170.1546032832544581No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8770.14785941048436183No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8690.14651063593034255No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC8310.14010395679875104No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC7610.1283021794510825No Hit
GCAGCTCGTGAAGAAGAAGAACCGCACGAAC6730.11346565935687056No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6390.1077333675022887No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6210.10469862475574537No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)