FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942281

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942281
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences576476
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19550.3391294693968179No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG7750.13443751344375135No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6800.11795807631193667No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG6280.10893775282925916No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6100.10581533316217848No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5950.10321331677294457No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)